NMF: a flexible R package for Nonnegative Matrix Factorization

NMF: A flexible R package for Nonnegative Matrix Factorization

Renaud Gaujoux¹, Cathal Seoighe*²

(1) Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory 7925, South Africa
(2) School of Mathematics, Statistics and Applied Mathematics, National University of Ireland Galway, Ireland
* Corresponding author

Email: Renaud Gaujoux - <renaud at cbio.uct.ac.za>; Cathal Seoighe - <cathal.seoighe at nuigalway.ie>

	Software	References

Software & Documentations

Package source: NMF_0.4.6.tar.gz
MacOS X binary: NMF_0.4.6.tgz [not built yet]
Windows binary: i386 - x86_64
[R devel: i386 [N/A] - x86_64 [N/A]
Reference manual: NMF-manual.pdf
Vignette: NMF-vignette.pdf
News/ChangeLog: NEWS

Install & Updates [CRAN version: 0.4.8] Reload

The NMF package is still under active development. The latest stable version of the package is available on CRAN. Get NMF 0.4.8 from CRAN.

Installation is done via the following standard call in the R console:

# install the NMF package from default CRAN mirror
install.packages('NMF');

Project & Development

The NMF package has a dedicated project on R-Forge. Go to the project home.

It provides access to useful tools such as the source code SVN repository, trackers to enter bugs or request features, and a mailing-list.

Acknowledgements

Funding: This work was funded by the South-African National Bioinformatics Network. Cathal Seoighe is funded through Science Foundation Ireland (Grant number 07/SK/M1211b).